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Reference Guide
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KCNE1
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KCNE1

The KCNE1 gene encodes a small membrane protein that partners with potassium channel proteins like KCNQ1 to regulate electrical signaling in the heart and inner ear. 

By helping form and modulate the IKs channel, KCNE1 plays an important role in cardiac repolarization, hearing, and fluid balance in other tissues.

What is KCNE1 (Potassium Voltage-Gated Channel Subfamily E Regulatory Subunit 1)?

The KCNE1 gene encodes a small transmembrane protein known as IKS β-subunit, minK, or IsK.

KCNE1 partners with larger potassium channel proteins, most notably KCNQ1, to regulate the flow of potassium ions across cell membranes.

KCNE1's Modulation of KCNQ1 Channels

KCNE1 does not form a channel by itself. Instead, it modulates KCNQ1, helping to form the IKs channel (slowly activating delayed rectifier potassium current).

It fine-tunes channel gating, slows activation, increases potassium conductance, and stabilizes channel function.

IKs Channel Composition and Function

The IKs channel, made of four KCNQ1 α-subunits and KCNE1 β-subunits, plays a critical role in cardiac repolarization.

It controls how the heart resets between beats, affecting the QT interval on an ECG. Proper IKs function prevents dangerous arrhythmias.

KCNE1 Expression in Other Tissues

KCNE1 is also found in the inner ear, where it helps maintain potassium balance necessary for hearing, and in the kidneys, testes, and uterus, where it likely regulates local ion transport and fluid balance.

KCNE1 Mutations and Clinical Manifestations

KCNE1 mutations may be associated with the following conditions:

Long QT Syndrome

Long QT Syndrome (LQTS) is a disorder in which the heart's electrical system takes longer than normal to reset between beats, as seen in a prolonged QT interval on an ECG. It can be inherited through mutations in ion channel genes or acquired from medications, electrolyte imbalances, or medical conditions. 

LQTS increases the risk of life-threatening arrhythmias like torsades de pointes, leading to fainting, seizures, or sudden cardiac death, sometimes without warning.

Diagnosis is based on ECG findings (prolonged QTc), evaluation of possible reversible causes, and sometimes genetic testing. 

Treatment focuses on preventing arrhythmias and includes beta-blockers, magnesium for acute management, and implantable cardioverter-defibrillators (ICDs) in high-risk cases. Early recognition and coordinated care among healthcare providers are crucial for improving outcomes.

Jervell and Lange-Nielsen Syndrome (JLNS)

Jervell and Lange-Nielsen Syndrome (JLNS) is a rare, severe form of congenital Long QT Syndrome characterized by a prolonged QT interval on electrocardiogram and sensorineural hearing loss.

JLNS results from inherited mutations affecting cardiac ion channels and carries a high risk of life-threatening arrhythmias.

Romano-Ward Syndrome (RWS)

Romano-Ward Syndrome is the most common form of congenital Long QT Syndrome, characterized by a prolonged QT interval without associated hearing loss. 

It is caused by inherited mutations affecting cardiac ion channels and increases the risk of syncope, seizures, and sudden cardiac death.

When is KCNE1 Genetic Testing Relevant?

KCNE1 testing may be relevant in the following scenarios:

Long QT Syndrome (LQTS) Diagnosis

Testing is important in individuals suspected of LQTS, a disorder that increases the risk of life-threatening arrhythmias and sudden cardiac death.

Jervell and Lange-Nielsen Syndrome (JLNS)

JLNS is a severe form of LQTS with congenital deafness, caused by homozygous KCNE1 (or KCNQ1) mutations.

It follows an autosomal recessive inheritance pattern.

Romano-Ward Syndrome (RWS)

RWS is a milder, more common form of LQTS without deafness. It can result from heterozygous KCNE1 mutations and follows an autosomal dominant inheritance pattern.

Family History of LQTS or Unexplained Sudden Death

Testing may be offered to relatives of affected individuals to detect those at risk before symptoms occur.

Evaluation of Unexplained Syncope or Arrhythmias

In patients with fainting episodes or irregular heart rhythms, KCNE1 testing helps uncover genetic causes, especially when there is a family history.

KCNE1 Genetic Testing: Test Procedure and Interpretation

Testing for KCNE1 is performed as a genetic test to look for mutations in the gene that would alter functional protein availability. The following section outlines the testing procedures and interpretation.

Testing Procedure and Preparation

Genetic testing involves blood, saliva, or cheek swab samples, although specialized laboratories may recommend different sample types. 

A cheek swab or saliva sample is easily obtained from the comfort of home, while blood samples typically require a blood draw.

Normal Reference Ranges

Normal reference ranges for KCNE1 genetic testing are considered to be without mutations that can alter the activity of the KCNE1 proteins.

What Do Specific KCNE1 Mutations Mean?

Identifying a pathogenic KCNE1 mutation confirms a genetic diagnosis of LQTS, guiding risk management and therapy.

Impact of KCNE1 Mutations on IKs Channel Function

Mutations typically reduce IKs channel activity, slowing cardiac repolarization, prolonging the QT interval, and raising the risk of arrhythmia.

Genotype-Phenotype Correlations in KCNE1-Related LQTS

  • JLNS: Severe congenital deafness and marked QT prolongation.
  • RWS: QT prolongation without hearing loss; variable severity.

The degree of QT prolongation and arrhythmia risk can differ depending on the specific mutation.

Inheritance Patterns of KCNE1-Related LQTS

What Does the Absence of Pathogenic KCNE1 Mutations Mean?

A negative KCNE1 test does not rule out LQTS.

Other genes, such as KCNQ1, KCNH2, and SCN5A, also cause LQTS. If clinical suspicion remains high, further genetic testing for additional LQTS genes is recommended to fully assess arrhythmia risk.

Key Clinical Takeaways

KCNE1 regulates KCNQ1 channels, essential for normal heart repolarization and inner ear function.

Mutations in KCNE1 cause Long QT Syndrome types 5 and JLNS, predisposing to arrhythmias and sudden death.

Genetic testing is required for diagnosis, family screening, and personalized management.

Therapies (beta-blockers, ICDs) and lifestyle changes may help reduce life-threatening events in affected individuals.

Drug sensitivity: KCNE1 variants can increase the risk of drug-induced arrhythmias, especially with certain antiarrhythmics and antibiotics.

Absence of KCNE1 mutations warrants testing of other LQTS-related genes if suspicion persists.

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See References

Abbott, G. W. (2013). KCNEgenetics and pharmacogenomics in cardiac arrhythmias: much ado about nothing?. Expert Review of Clinical Pharmacology, 6(1), 49–60. https://doi.org/10.1586/ecp.12.76

Al-Akchar M, Siddique MS. Long QT Syndrome. [Updated 2022 Dec 26]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK441860/

Faridi, R., Tona, R., Brofferio, A., Hoa, M., Olszewski, R., Schrauwen, I., Assir, M. Z. K., Bandesha, A. A., Khan, A. A., Rehman, A. U., Brewer, C., Ahmed, W., Leal, S. M., Riazuddin, S., Boyden, S. E., & Friedman, T. B. (2018). Mutational and phenotypic spectra of KCNE1 deficiency in Jervell and Lange‐Nielsen Syndrome and Romano‐Ward Syndrome. Human Mutation. https://doi.org/10.1002/humu.23689

Gene Database. (2025). KCNE1 Gene - GeneCards | KCNE1 Protein | KCNE1 Antibody. Genecards.org. https://www.genecards.org/cgi-bin/carddisp.pl?gene=KCNE1

KCNE1 gene: MedlinePlus Genetics. (n.d.). Medlineplus.gov. https://medlineplus.gov/genetics/gene/kcne1/

KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 [Homo sapiens (human)] - Gene - NCBI. (n.d.). Www.ncbi.nlm.nih.gov. https://www.ncbi.nlm.nih.gov/gene/3753

Muhammad, A., Calandranis, M. E., Li, B., Yang, T., Blackwell, D. J., Harvey, M. L., Smith, J. E., Daniel, Z. A., Chew, A. E., Capra, J. A., Matreyek, K. A., Fowler, D. M., Roden, D. M., & Glazer, A. M. (2024). High-throughput functional mapping of variants in an arrhythmia gene, KCNE1, reveals novel biology. Genome Medicine, 16(1). https://doi.org/10.1186/s13073-024-01340-5

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